gdc-rnaseq-tool
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Published
20 hours ago •
cpreid2
cpreid2
Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
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gdc-rnaseq-tool issues
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Reading Manifest File from: Test_Manifest.txt Downloading Files to: ./Merged_RNASeq_20190406-132736/ Traceback (most recent call last): File "gdc-rnaseq-tool.py", line 137, in data = json.loads(r.text) File "/home/uavws/anaconda3/lib/python3.6/json/__init__.py", line 354, in loads return _default_decoder.decode(s)...
Noticed that w --hugo flag, the ensembl_id label is missing from the header rows of Merged_Counts.tsv, Merged_FPKM.tsv & Merged_FPKM-UQ.tsv files. ``` | gene_name | TCGA-VD-A8KF-01A-11R-A405-07 | TCGA-WC-A87U-01A-11R-A405-07 -- | --...
