Chirag Parsania, Ph.D.

Hi Yan, Here is the one DataViz project I have been working on - FungiExpresZ - https://cparsania.shinyapps.io/FungiExpresZ/. It's a shiny app allow users to generate >25 ggplot2 based publication ready...

Hi, I tried to download the OrgDB object sourced by fungidb through annotationhub. Somehow it failed. See the commands and error below ``` library("AnnotationHub") hub hub AnnotationHub with 46259 records...

Feature request : add taxon id for each blast hit

3

Default blast tabular format output (outfmt 7) doesn't add taxon id for each blast hit. Taxon id is very important for downstream phylogenetic analysis. Indirect approach to add taxon id...

function blast_protein_to_protein with argument is.subject.db = TRUE doesn't work with nr database

3

I have nr blast database downloaded from NCBI, which contains the files given in the attached snapshot. When I run the command below, it throws the as shown. I wonder,...

Hi Colin, I wonder is there any systematic way to show package version (given in `DESCRIPTION` file under the tag `Version`) somewhere on the shinyApp (Let's say app footer or...

estimated library size of NucleosomeFree.bam is unexpectedly small

2

Hi, After shift and splitting bams according to fragment size, I see amongst all bam the largest bam is NulceosomeFree.bam which is expected. However, when I run estLibSize (from ChIPpeakAnno...