Cosimo Lupo

Just a fix for a small bug, affecting the initial nMer along the V gene.

Typo fix

1

Fixes a few typos detected, among which an old release tag and a contact point email address to be yet updated.

Avoid using "|" character in naming profile variants

1

During the recent EBRAINS Software Distribution (ESD) Hackathon in Heidelberg, a potential weakness of Cobrawap has been pointed out. As well documented [here](https://cobrawap.readthedocs.io/en/latest/pipeline.html#configuration), for a fixed profile of analysis, different...

Upper limit for PuLP version < 2.8.0 seems to be required

2

**PROBLEM** When installing cobrawap via PyPI, the "undirect" PuLP dependency (i.e. not explicitly listed in the `pyproject.toml` file, but required by other listed dependencies) is not upper-bounded for what regards...

Pointing the correct previous stage when running "cobrawap run_stage" command

1

When invoking the `cobrawap run_stage --stage X` command line, `STAGE_INPUT` field is reconstructed by browsing the stage list provided in the top-level config file, locating the current stage X with...

Uncorrect retrieval of stage02 PLOT_TSTART and PLOT_STOP parameters

1

The current syntax in stage02 Snakefile is suspected of not properly inferring the actual values of `PLOT_TSTART` and `PLOT_TSTOP` indicated in the corresponding config file, hence causing a blocking error...

This Pull Request is intended for a general housekeeping of the code, in view of the major 0.3.0 release. In particular, here the focus is on typo fixes, indentations, alignment...

Building on recent observations that analog signals derived from spike trains may need to be convolved with some finite-size width analytic function, here we provide a script for a channel-by-channel...