Conor Meehan

icon indicating a website link https://www.ntu.ac.uk/staff-profiles/science-technology/conor-meehan icon indicating an email [email protected]

icon company Nottingham Trent University icon location Nottingham, UK icon location Associate Professor of Microbial Bioinformatics focussed on microbial phylodynamics/phylogenomics, primarily Mycobacteria, microbiomes and HIV/STIs.

Results 2 issues of Conor Meehan

CodonAdaptationIndex math domain error

10 comment

I get an error on certain sequences when running the CodonAdaptationIndex module from Bio.SeqUtils.CodonUsage. The error is thrown when using the cai_for_gene method. The error is: ``` File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsage.py", line...

Bug
help wanted

Update H. flu database to new sklearn version

2 comment

**Versions** poppunk 2.6.0 zsh: command not found: poppunk_sketch poppunk_assign 2.6.0 Conda list: # packages in environment at /Users/cmeehan/opt/miniconda3/envs/poppunk: # # Name Version Build Channel aom 3.5.0 hf0c8a7f_0 conda-forge atk-1.0 2.38.0...

model