Conor Meehan

icon indicating a website link https://www.ntu.ac.uk/staff-profiles/science-technology/conor-meehan icon indicating an email [email protected]

icon company Nottingham Trent University icon location Nottingham, UK icon location Associate Professor of Microbial Bioinformatics focussed on microbial phylodynamics/phylogenomics, primarily Mycobacteria, microbiomes and HIV/STIs.

Results 5 comments of Conor Meehan

CodonAdaptationIndex math domain error

Oh, the indentation did not come out. I have the LengthForCai += 1 outside the if self.index[codon]!=0.00: so that if it is 0.00 the caiValue is not changed but the...

Update H. flu database to new sklearn version

Ah sorry, I didnt see that bit in the README. Surprised that it worked on the Ubuntu box, must have used a different scikit-learn and I just didn't notice. The...

Segmentation fault in STEP 4: CONVERTING KMER MAPPINGS INTO READ CLASSIFICATIONS

I just want to say this is still an issue and indeed is fixed with the taxonomy check in kraken_processing.cpp. It means that Bracken cannot be sued from Conda as...

Segmentation fault in STEP 4: CONVERTING KMER MAPPINGS INTO READ CLASSIFICATIONS

Did you rebuild the kraken_processing.cpp as outlined above? That fixed it for me.

Curation

I'm happy to help out too, sure.