Colin Davenport
Colin Davenport
Thanks @iiSeymour for the `cuda-11.8` build. This is absolutely essential for those of us using 24GB A30 GPUs for dorado-correct (the official build was using >22GB GPU RAM and managed...
Hi @iiSeymour , well, current tests indicate `cuda-11.8-v0.9.5` is about 7x as fast for some datasets, but that is likely due to our gpu RAM limit being hit and gpu...
This idea is interesting - is it integrated into the latest release and ready for testing ? Thanks. Edit - I guess it was integrated in this release : https://github.com/wdecoster/chopper/releases/tag/v0.11.0
Have you tried using `--n-hap 4` ?
Excellent, thanks for the clear answers. I look forward to increased speed on the polishing since Medaka can be prohibitively slow for genomes over 4 GB in size.
Thanks for adding this to dorado, I'm hoping for greatly improved results. I'm getting issues with the download too. I'll add curl to the container ( I have it on...
I can get dorado correct working now with the new version and with dorado in a singularity container with jobs started by nextflow. I was having trouble since I forgot...