Colin Davenport

We have a similar problem when working with long chromosomes, for example with wheat The offending line is https://github.com/nanoporetech/medaka/blob/9dffdee0de4c76a9bf382b601261db43bd030c26/medaka/wrappers.py#L79 As the previous poster says, this problem could be alleviated using...

Ok, thanks. I submitted a PR. For others, if ONT can't or won't accept the PR due to other breakages being caused, you can modify the `mini_align` script from the...

I was just looking for this right now :-)

I think the reverse is true, a `rGFA to GFA` conversion tool is (also) severely lacking. While minigraph is apparently the most efficient and promising pangenome tool at present, the...