Chang Kim

icon company University of California San Francisco

Results 9 comments of Chang Kim

Error in setDataExpr

Hmm the tutorial works works, I however skipped the setDataExpr step and now get an error during ModuleConnectivity: ``` first

Is dims.use actually working in RunHarmony?

I should point out I ended up just redoing RunPCA with desired PCs after checking elbow plot (or jackstraw).

Racon compatibility?

Sorry I got sidetracked, but I was planning on using [MarginPolish](https://github.com/UCSC-nanopore-cgl/MarginPolish) + [HELEN](https://github.com/kishwarshafin/helen) to improve the accuracy. I was thinking of using the first consensus of the POA (as it...

Racon compatibility?

So I guess would it be possible for Tidehunter to output all the subreads as well?

Racon compatibility?

Thanks, I'll try this over the weekend.

Add batching to Solo

I was wondering on the status of this feature? I've been using a little wrapper script that can do multiple batches with solo using the Ray library to distribute over...

Using STARSolo SJ.out.tab?

I just noticed in FindPeaks, it says SJ.out.tab is fine. I guess a more specific question I had multiple SJ.out.tab files from the same sample but different 10x lanes, it...

Using STARSolo SJ.out.tab?

This error occurred after passing one SJ.out.tab file that was concatenated together. Also, in my case the separate runs have their own biases which I specifically do not want to...

allc_to_region_count() missing 1 required positional argument: 'cmeta_path'

I am also getting this