allc_to_region_count() missing 1 required positional argument: 'cmeta_path'

[rogadde]

Hello,

I recently noticed the function allc_to_region_count() in ALLCools 1.1.0 requires an additional argument 'cmeta_path' that is not described in the documentation, which subsequently causes an error when running allcools allc-to-region-count from the command line. Earlier versions of ALLCools don't require this argument, so I'm not sure if this is a bug or if the documentation simply hasn't been updated.

[Fengsundog]

I tried earlier version of ALLCools without 'cmeta_path', although there still existed some other issues, at least it could run without error.

[lhqing]

@rogadde can you provide a detail error trace? The cmeta_path is for the BALLC format, which shouldn't impact normal ALLC. Thanks

[xixueyu96]

Hello,

Is there any follow-up on this issue? I'm using the allc-to-region-count from ALLCools 1.1.1, and also got the message that 'cmeta_path' is required.

[cnk113]

I am also getting this

[JunxiFeng]

Hi Hanqing, I would like to follow up with this issue and see if there is a solution to this! Thank you!