Cécile Monat

Thanks for your anwser. I have no gene_context.tsv file, the only output I got from these tries are input_to_pangenome_associations.blast-tab input_to_pangenome_associations.blast-tab_tmp sequences_partition_projection.tsv So maybe something went wrong and cannot finish the...

Ok, thanks :) In the sequences_partition_projection.tsv I only have one line and there were 10 sequences in the prot_from_ncbi.fasta file ... =S

Hello, I've made a try with your recommendations and I still don't get the final output gene_context.tsv. The log says: --- > ppanggolin context -p pangenome.h5 --sequence prot_from_ncbi.fasta -o genomic_context/...

Ok, thank you very much for your help. I'll make some tests increasing the transitivity, thanks Have a great day C.

Hi, I'm wondering if the pull request as been done and so if it should work without problem on large genomes? Thank you and have a great day Cheers C.

Hello, sorry for jumping into this conversation but I face a similar problem I think. But first, on one hand, for me the `empty.intersections=TRUE` is not working. I mean the...

Hello, I'm also interested to get this tree, how is it possible? Thanks a lot C.

Hello, I have the same problem, I read the solution you offer but I'm wondering: the single-quote character is supposed to be an ASCII character [https://www.ascii-code.com/39] so, why does this...

Ok, thanks a lot for this explanation! 😃 C.

Hello, I have similar problem when I try to install edyeet. I have the following error messages: ````bash s1060627@usrelhpc02:[~/edyeet-0.3]> module load cmake/3.20.0 s1060627@usrelhpc02:[~/edyeet-0.3]> cmake -H. -Bbuild && cmake --build build...