Colin Diesh

it is experimental still but I tried to make an attempt at multi-way here https://github.com/GMOD/jbrowse-components/pull/4430 It needs some polish but if the concept stands up, it could work! It leans...

@dirkjanvw some continued progress has occurred on the multi-level branch over the past month or so :) If you want to try it out you can use e.g. `jbrowse create...

yep those are two problems that need resolving still! I am still brainstorming whether that page system is the right approach... and the 'synteny track selector' when it's multi.level could...

I went ahead and merged multilevelsynteny to main branch. The UI was adjusted a little bit so there is now a 'track selector' for each 'row'. Still need to add...

might mark as closed after merger of https://github.com/GMOD/jbrowse-components/pull/4430 can do new issues in follow up thread maybe

could go some ways towards solving https://github.com/GMOD/jbrowse-components/issues/4434 (set-default-session cli command)

random add on: these types of "helpers" that interpret a simplified form of the session being imported could go some ways to allowing "defaultSession to be more editable/programmable by humans"...

If I visit https://jbrowse.org/storybook/lgv/main/?path=/story/source-code-for-examples--one-linear-genome-view and open up the "1000genomes" vcf, the resulting dialog seems to be ok if you have a link to your code i might be able to...

i saw this PR was merged remotely on your repo! i might close for now here. this was an odd one though so if it continues being troublesome let me...

we may want to create a utility to 'round trip' cram back to sam, for comparison to e.g. samtools view for this. there is som amount of code for this...