Claudia Calabrese

Dear Madeline, thanks for reporting this issue and apologies for the delay in answering your question. We think that this might be due to the fact that position 12705T is...

Hi, can you please try again a git pull to upload your local copy of MToolBox? Since the v. 1.2 release we have done additional fixes, which might solve your...

Hi Jon thanks for letting us know about this issue. We would need an example to be able to debug, I am afraid... If you could share that with us...

Hi, 1000 Genomes consortium has also provided a phase 3 mtDNA variant call set (http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/) you can use as comparison, although I am not aware of the quality control advised...

Not at the moment Il giorno lun 14 mar 2022 alle ore 16:04 Antonio Ulloa < ***@***.***> ha scritto: > Do you have an mtoolbox docker container publicly available? >...

Dear Taka, With how many threads did you encounter this issue? At the time we updated MToolBox to v.1.0 (around April 2016, although we announced it later on, in June...

thanks for giving us more detailed information about your issue. Well, unless the options of GSNAP we use in the mapExome.py (which are very basic) did also change, I don't...

Hi Pradyumna, This version of MToolBox does not support long reads. However, we are working on a new version of the tool which will likely also be able to deal...

Hi, can you please share the input file that generates this error? That will help debugging. thanks Best wishes, Claudia

Hi, thanks for sending the files. This https://github.com/mitoNGS/MToolBox/commit/58f3db1b2d86715ae4fd56f014edd5b9dd212be1 should fix the issue now. Best, Claudia