dnaPipeTE

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If works with long reads?

1

Hi, we have some long reads that we don't want to build assemblies, and we are wondering if dnaPipeTE will work with Nanopore reads? Many thanks!

CWYuan08

Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", : cannot open file 'Rplots.pdf'

1

What should I do when I run dnaPipeTE and I get Bases_per_components.pdf and TEs_piechart.pdf but no landscape.pdf During startup - Warning messages: 1: Setting LC_CTYPE failed, using "C" 2: Setting...

xx0811

FATAL message when attempting to rerun program

2

Hi Clement. Unfortunately, I did have a run crashing after more than 24 hr. I am trying to restart the run but there is an error message (any recommendation to...

AntonioBaeza

Inchworm process fails

4

Hi Clem, I'm trying to run dnaPipeTE on fastq.gz files with trimmed and post-QC reads and it seems to work fine until the Inchworm bit of the Trinity run, where...

sergiogonmoll

ERROR : Failed to mount squashfs image in (read only): Invalid argument

1

Admittedly, I am new to singularity, this is the error after installation: (base) ant@hillary:~$ pwd /home/ant (base) ant@hillary:~$ (base) ant@hillary:~$ mkdir ~/dnaPipeTE (base) ant@hillary:~$ (base) ant@hillary:~$ cd dnaPipeTE/ (base) ant@hillary:~/dnaPipeTE$...

AntonioBaeza