FATAL message when attempting to rerun program

[AntonioBaeza]

Hi Clement. Unfortunately, I did have a run crashing after more than 24 hr. I am trying to restart the run but there is an error message (any recommendation to avoid running it all over again? thanks!):

(base) ant@hillary:~/dnaPipeTE$ pwd /home/ant/dnaPipeTE (base) ant@hillary:~/dnaPipeTE$ (base) ant@hillary:~/dnaPipeTE$ ll total 851569980 drwxrwxr-x 6 ant ant 197 Aug 22 23:33 ./ drwxr-xr-x 63 ant ant 4096 Aug 22 23:55 ../ -rw-r--r-- 1 ant ant 270 Feb 22 19:45 config.ini -rw-r--r-- 1 ant ant 779721628120 Jan 10 2023 Dfam.h5 -rw-r--r-- 1 ant ant 89685263357 Jan 10 2023 Dfam.h5.gz -rwxr-xr-x 1 ant ant 2600677376 Feb 21 2023 dnapipete.img* -rwxrwxr-x 1 ant ant 73352 Feb 22 20:09 famdb.py* drwxrwxr-x 4 ant ant 53 Apr 12 11:09 Project/ drwxrwxr-x 4 ant ant 53 Apr 14 12:07 Project2/ drwxrwxr-x 4 ant ant 53 Aug 22 21:55 Project3/ drwxrwxr-x 4 ant ant 53 Aug 22 23:49 Project4/ (base) ant@hillary:~/dnaPipeTE$ (base) ant@hillary:~/dnaPipeTE$ singularity shell --bind ~/dnaPipeTE/Project4:/mnt ~/dnaPipeTE/dnapipete.img FATAL: container creation failed: mount /proc/self/fd/3->/usr/local/var/singularity/mnt/session/rootfs error: while mounting image /proc/self/fd/3: failed to find loop device: could not attach image file to loop device: no loop devices available (base) ant@hillary:~/dnaPipeTE$

[clemgoub]

Hi Antonio,

This error seem to come from singularity on your system. It looks like there are ways to fix it, but I would refer to your IT if this is on a server.

In order to see if you can recover the run, I would need the detailed log and command of the previous run.

Best,

Clément

[AntonioBaeza]

Hi Clement. I understand and thanks for the tip. I will contact the IT team of my institution. Thank you again, Antonio