Christopher E. Laumer

Hello Ivan, I'm writing to report that I've been working with a dataset which is causing segfaults in graphmap, but curiously only when running with the anchored alignment algorithm --...

Hi there, sorry to reawaken this, but it seems I'm having the same problem with ra. Minimap2 runs just fine, creates an overlaps.paf, rala begins and creates an empty preconstruction.fasta...

Hi Robert, I've just sent you a link by email to download these data and play around yourself. I find with this dataset on my local cluster that minimap2 needs...

Also having major troubles with this - the README provided with Augustus (last edited 6 years ago by @KatharinaHoff ) to guide in making a custom Makefile does no good...

Thank you for your quick response! I have, I think, tried to modify the makefile to resemble yours. I put bamtools within my Augustus install directory on an nfs drive...

Hey, just thought I'd chip in to mention I've seen a similar problem. Segfault within the first second of running rattle correct: Reading fasta file... Done Segmentation fault (core dumped)...

Hello Sagnik, Apologies for the delay in getting back, we've been having major i/o problems on the filesystem my run was stored on so it's been hard to access my...

Hello again Sagnik, I have tried again with the most recent code from this github repository, deleting the assemblies_psiclass_modified directory and starting again, and am sorry to tell you that...

I'm having the same test error too, in a fresh install: (pore-c-snakemake) [claumer@BUCEPHALUS Pore-C-Snakemake]$ snakemake --use-conda test --cores 1 --config=output_dir=results.test Building DAG of jobs... Creating conda environment envs/juicer_tools.yml... Downloading and...

Hi Priyesh, Thanks for that. Just to be sure, the operation you suggest does result in some sorts that split paired end reads: ctg252 130945 131216 00003729-4688-4f8b-a3d3-cd0d595f5b03_1_10/1 30 - ctg135...