Christopher E. Laumer

Hi Sergio, Thanks for the fast response. When running the same command in a fresh environment with -profile conda, it halts with the following: --- Error executing process > 'evigene...

Hi Zemin, The tmp directory has: -rw-r--r-- 1 claumer marioni 475390678 Feb 16 12:55 tarseq.fastq -rw-r--r-- 1 claumer marioni 16530 Feb 16 12:55 tarseq.tag -rw-r--r-- 1 claumer marioni 237691388 Feb...

Hi Zemin, To clarify, I meant the unaligned fastqs that you get after running the "longranger basic" command. But I did actually try on the raw reads as well after...

Hi Zemin, Sorry also on my part, I've been doing some intensive labwork the last couple days and let this fall to the wayside momentarily. So the tmp directory contains:...

OK, you can grab the files in question at: /lustre/scratch117/cellgen/team220/cl16/DalyG_GyrF_10X The fastqs starting with DalyG* are the raw linked reads for the species in this assembly (ignore the GyrF* files)....

Hi Zemin, That's really interesting, and I thank you very much for your work on these data. Yes, I'm aware of the length issue with the linked reads - it...

I'm getting a very similar error, 10 months later - is the ORP no longer being maintained?

Hello, Nice to see this discussion and these developments - I was having a similar problem as the users above (the pip default version of isONform was generating empty files)....

Hello Alexander, Of course. The output from running isONform_parallel on the new directory containing the corrected fastqs are like this: ``` (isoncorrect) isONform_parallel --fastq_folder isONclust3_test/corrected_fastqs2/ --t 8 --outfolder assembly2 7...