Inês Mendes
Inês Mendes
Hello! I've been using InSilicoSeq to generate mock communities for a project of my own to assess assembly quality (https://github.com/cimendes/LMAS). To match the distribution of a real community, I've computed...
This PR adds copyright information of the FlowCraft project. --- This change is [](https://reviewable.io/reviews/assemblerflow/flowcraft/216)
https://github.com/OLC-Bioinformatics/ConFindr
As of Nextflow's version [19.08.1-edge](https://github.com/nextflow-io/nextflow/releases/tag/v19.08.1-edge), the set input type has been deprecated. Use tuple instead. More info here: https://www.nextflow.io/docs/latest/process.html#input-of-type-set & https://www.nextflow.io/docs/latest/process.html#input-of-type-tuple
This PR updates the modules in Innuca's recipe to incorporate the latest changes in the INNUca pipeline (https://github.com/B-UMMI/INNUca). Several components where updated and/or reworked including integrity_coverage, mlst, process_assembly and process_assembly_mapping....
With the "optional true" in the output field, this process will never fail. If the download (for whatever reason) fails, the user should know :P I don't know if there...
This PR fixes the issues raised in #219. I've moved the problematic file from the bin folder and into templates, updating it to python3. I've also adjusted the components "remove_host"...
This change is [](https://reviewable.io/reviews/assemblerflow/flowcraft/226)
All FlowCraft pipelines have been failing in the latest version of nextflow (installed through conda). The errors are fairly general. For example I created a simple pipeline with just one...