mnnpy

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1

Hi @chriscainx I am trying to figure out Usage section. I have several questions: - Where do you get files such as `Sample1.h5ad`? - Where do you get function `load_from_file("Some...

stashkov

invalid input dtype (input must be float64 or complex128)

2

Hey there, I'm running mnn_correct on 5 AnnData batches. I'm finding that with either svd_mode='svd' or svd_mode='rsvd', I am geting the same error posted below. I can assure you, the...

dylkot

I'm running into an issue when I try to run the function in preparation for integrating my datasets. I tried the solution listed in issue #49 ( Temporarily switching to...

eriksamuelsson1

Unexpected keyword argument {'n_jobs' ...}

2

I am running the function on my jupyter python 3.9 notebook, and I always see this TypeError: Unexpected keyword argument {'n_jobs: [# of my cpu cores]} I am really not...

yjkweon24

I felt confuse with the parameter(svd_dim) in `mnn_correct`, Is it the implementation of fastMNN(https://marionilab.github.io/FurtherMNN2018/theory/description.html)?

yuxiaokang-source

Hello, I am trying to run mnnpy.mnn_correct on 2 anndata objects. The code works until the last step of packing AnnData and I get the error: AttributeError: Can only use...

cameronyoungpark