Chris Miller

Feature Request: filter by read group

3

Many groups are now doing eWGS, where an exome and whole-genome are created from different libraries, but sequenced together (with different indices). They're generally aligned together into one bam/cram, since...

v2.24 gives "Error loading: libAbra.so", older versions do not

7

On a Ubuntu base image, if I try to use the precompiled `abra2-2.24.jar`, using command: ``` java -jar abra2-2.24.jar --in input.bam --out out.abra.bam --ref reference.fa --threads 2 --tmpdir /tmp ```...

upset R package compatibility

3

In the R upset package installed in the bioconda/quay repository, the options `mainbar.y.label` and `sets.x.label` do not exist, causing a failure: ``` $ intervene upset --names A,B,C -o . -i...

summation error

1

via email from krzysztof.szymiczek: Is it an error ? -> seems to me that all the conditions are meet. > #create a fish object > fish = createFishObject(frac.table,parents,timepoints=timepoints) Error in...

via email from krzysztof.szymiczek: Hello, maybe this is a bug... but here is the output of fishplot with marked areas where the plot is "not so nice" IMO there where...

Typo, but I think I'm going to start referring to maternal haplotypes as "chromomsomes"