Chris Miller
Chris Miller
We have no issues with the plan. Looking forward to testing out the bigwig functionality!
I totally get that it might not be a high priority - thanks for responding! I don't have a great example of a tool that implements this in a joint...
Have you considered posting a preprint to bioRxiv, which would allow you to accumulate citations and credit in the meantime? http://biorxiv.org/
I don't know offhand, but I was running it from the bioconda container, so the environment should be available in that docker image: https://bioconda.github.io/recipes/intervene/README.html Thanks for looking into it!
If you closely follow the instructions in the main README, it describes a specific directory structure that needs to be set up, including a "params" file, which appears to be...
Is your working directory the same one that contains the params file? `getwd()`
Strange... I don't have a clear explanation for that behavior. Off the top of my head: permissions issues? If you try it manually with something like `read.table("params")` can it find...
I'm having this same issue, many years later. Was a solution ever found?
Found a workaround that requires a loop and creating a new dataframe with identically named columns for every iteration (instead of substituting columns into the formula). It's not ideal, but...
Yes, that's a thing that can happen in edge cases. There is a `pad.left` parameter on the fishPlot function that can be modified to help with that - I'd suggestion...