Christopher Kittel
Christopher Kittel
ah yes, it is related to #20
@sckott maybe you can have a look? On the side of our backend (pubmed.R) the search returns an error 500. the search was for "lie detector" with following parameters `1809-01-01...
Yes, we always use the default limit of 100. At a first glance, I couldn't discern something that would make this query different from any other?
Sorry for the long delay - I also can't generate more information from the OKM-R backend without digging deeper into rentrez about which I don't know much, sorry.
@sckott yes, an error can be replicated with the following. I'm explicitly saying "an" error, because the error for the above-mentioned example has changed. it was a while since I...
Thanks for that proposal! We also have to make sure it works for the case when the result set is < 50 (e.g. when the timeframe is short, e.g. mindate...
I had to adapt the solution slightly to accomodate our `limit` param, and this approach solves the immediate problem of running into server-side timouts. ``` limit1 = ifelse(limit
@sckott I implemented a solution [here](https://github.com/OpenKnowledgeMaps/Headstart/compare/257-infinite-pmsearch?expand=1) It solves the issue of responses that are too big for a single `entrez_search`. The resulting response object is ~100MB big for the query...
update: for some links, for others it works. will try to come up with a reproducible example.
I think in the long run some generic OKM syntax would be great to have, it is counterintuitive having to change syntax within the same interface, especially if it is...