Christopher Chang

Now updated in plink 1.9.

It will be implemented... but not before generic merge and --r2 are working, so not that soon. In the meantime, plink 1.9 --clump has been retrofitted to be usable on...

This is now implemented. It ended up moving ahead of merge and --r2 after all, partly because I realized that plink 1.9 --clump did not filter on the TEST column...

I was planning to start using real version numbers at the beginning of beta testing. (About 85% of the way there; still need merge and multiallelic-dosage functions before the program...

Yes, it shouldn't be difficult to add support for a sparse input format to --score; I'll look into implementing this over the next week.

It isn't that much better than a bash for-loop, but --score-list exists, so I'll close this issue.

If you can't figure out how to make the zstd.h header visible to your compiler, you can add -DSTATIC_ZSTD to the build flags.

This isn't currently built-in, but if you use plink2 --set-all-var-ids on your dataset first, it's straightforward to extract chrom/pos from the ID strings.

You can use [--recover-var-ids](https://www.cog-genomics.org/plink/2.0/data#recover_var_ids) to recover the original IDs whenever they're needed.

For now, export a .bed and use plink 1.9 for this.