PRSice

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[BUG]PRS model-fit

1

**Describe the bug** A clear and concise description of what the bug is. I have a question about the output result PRS model-fit hope to get help. I set a...

JY879013005

Retrieve gene names from PRSet output [request]

1

Hi, Thank you very much for this amazing piece of software! Would be possible to add on gene names on the final output of PRSet?

maff1

[BUG]Error: No valid variant remaining

2

**Describe the bug** Error: No valid variant remaining Error: Execution halted Please always include the log file generated by PRSice. My final log file is as follows: PRSice 2.3.3 (2020-08-05)...

MaleehaMaria

Error: Cannot open file: 510

2

**Issue** I have used the recommended input files but am getting an error. This is the exact line of code I used to run PRSice: `Rscript PRSice.R --dir . --prsice...

theclairecamp

Is this overfitting? PRScise-2

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   [DILIN.Sakaue2021.GCST90018798.noMHC.log](https://github.com/choishingwan/PRSice/files/8547491/DILIN.Sakaue2021.GCST90018798.noMHC.log) Hi I'm using PRSice-2 to run 100s & 1000s of traits from various studies from GWAS Catalog...

samreenzafer

How to apply to Discovery dataset

2

Hi, I am a bit confused about how to use PRSice-2 to calculate the Polygenic Risk Score for the discovery dataset. I have a Case/Control dataset (binary phenotype) and I...

ArashLab

plink --score

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hello, I have some questions, why do I use plink-score to get PRS, according to the tutorial on https://choishingwan.github.io/PRS-Tutorial/, the results are not consistent with the results obtained by PRSice?...

ooozcl

PRSice does not run if no phenotype is presented- intentional?

4

I am getting an error and wanted to check with you if what I am observing is an error or intentional design. When all the phenotypes for the samples in...

MattCloward

Add new link to README in place of old link

JoniColeman

I have a binary trait and have generated a PRSice file. I would like to plot this but work on a HPC environment where plotting doesn't really work. I have...

oalavijeh