PRSice

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can not find the "PRSice_win64.exe"

2

Hi, choishingwan, I want to run PRSice functions on window system, however, I can not find the "PRSice_win64.exe".

junjiaoFeng

Using Heterozygous only model

1

Hi, I would like to use the "het - Heterozygous only model, code as 0/1/0" function in PRSice. However, I am wondering what would be the best corresponding plink GWAS...

ruowangli

Obtaining PRS from a single individual using PGS Catalog files

1

Hi! I have been reading the documentation and some of your answers in forums. I understand that it is possible to calculate the PRS score for a single individual using...

aheritas

Error: Invalid .bed file size for .bed

4

**Describe the bug** I got the problem"Error: Invalid .bed file size for xxxx.bed". And I have no idea to deal with it. **Error Log** PRSice 2.3.5 (2021-09-20) https://github.com/choishingwan/PRSice (C) 2016-2020...

zfchen1

Error: No valid variant remaining

6

Dear Author, I am trying to run PRS but keep getting this error: `Error: No valid variant remaining ` PRSice 2.3.3 (2020-08-05) https://github.com/choishingwan/PRSice (C) 2016-2020 Shing Wan (Sam) Choi and...

Shrishtee-kandoi

Dear author, I am having some problems with using PRSice. I get an error saying duplicated SNP id: Error: A total of 1 duplicated SNP ID detected out of 0...

science987

Trying to run PRSice on files received by a collaborator but BGEN file is not being opened

1

I used the following command to calculate PRS of a sequenced file coming from a collaborator. I imputed the vcf file which gave me separate vcf files for each chromosome....

varsh19

INFO commands

1

Dear author, Thank you for creating this fantastic tool. I have a question about the info commands. I set the info criteria to 0.9 when I ran the command, but...

JihyunKiminGithub

[BUG]std::runtime_error when clumping

1

Hi! Thank you for all the hard work! I'm getting this weird error message after PRSice starts clumping: `PRSice --a1 ALT --a2 REF --or OR --bp POS --chr "#CHROM" --snp...

jraikist

[BUG] `sys/sysctl.h` is deprecated in glibc-2.3.2

2

**Describe the bug** Dear @choishingwan. The [deprecated](https://abi-laboratory.pro/index.php?view=changelog&l=glibc&v=2.32) `sys/sysctl.h` is used in a few places across the PRSice [codes](https://github.com/search?q=repo%3Achoishingwan%2FPRSice%20sysctl.h&type=code), preventing compilation of the project. **Error Log** Compilation error running `make`: ```...

espenhgn