chengyu zhang
chengyu zhang
@edkerk that's my fault, i wiil detail more information.
@edkerk Is there any issue about the new reactions that I need to fix?
@edkerk Hi, Ed. I encounter a problem. When I fail to run `deletion = cobra.flux_analysis.deletion.double_gene_deletion(model, gene_list1=pair1, gene_list2=pair2)` in python using yeast-GEM from both main branch and develop branch. Even if...
@edkerk @hongzhonglu Are there any methods to solve the above problem?
@edkerk @hongzhonglu `double_gene_deletion` and `single_gene_deletion` could be perfectly performed in iML1515 and yeast-GEM 8.5. But in the latest yeast-GEM, somthing goes wrong. However, matlab can run `double_gene_deletion` with a solvable...
> I went through all suggested reactions, checked them one-by-one. With the quality of the current yeast-GEM, one should be careful to include new reactions, there should be more evidence...
I will think about it.