yeast-GEM
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feat: Uniprot annotations for all genes
Description of the issue:
Add Uniprot annotations in model.geneMiriams (see identifiers.org) for all genes. Use the S288c reference proteome as source, providing one Uniprot ID per gene.
I hereby confirm that I have:
- [x] Tested my code with all requirements for running the model
- [x] Done this analysis in the
mainbranch of the repository - [x] Checked that a similar issue does not exist already
- [ ] If needed, asked first in the Gitter chat room about the issue
Hi Ed, what is detailed annotation, only the Uniprot ID per gene?
Indeed, this has recently been done nicely for new genes that @cheng-yu-zhang has been introducing (example, uniprot column), having this for all genes would be useful, particular with ec-models in mind.
I see. It looks great.
Looking at the information that can be parsed from Uniprot, this can probably quite easily be implemented.
I will think about it.