Chase Clark

install_user_app() code

1

Here is where it breaks: ` my_package_name

There are leftover dependencies from the earlier development phase of this package. These should be trimmed to as minimal a list as possible. https://github.com/chasemc/electricShine/blob/master/inst/template/package.json

The R version for chosen for an electricShine must be the same as the R version being used to build it. Need to add a warning into the code for...

Electron doesn't have a default context menu. Have to implement it in the template nodejs.

Allowing non nf-core hosted packages to not fail linting

6

## Is your feature request related to a problem? Please describe No ## Describe the solution you'd like I'm working on several projects where we aren't targeting submitting to nf-core...

Copy LICENSE when installing an nf-core hosted module

1

Briefly discussed in the #modules channel of slack. "Installing" a nf-core module with e.g. `nf-core modules install . -t untar` doesn't transfer a license, leaving it to the person installing...

Unable to download anything but fna files

5

datasets version: 3.42.1 command: `datasets download genome accession GCA_000302695.1 --include-gbff` Results: ``` ├── ncbi_dataset │   └── data │   ├── assembly_data_report.jsonl │   ├── dataset_catalog.json │   └── GCA_000302695.1 │   ├── GCA_000302695.1_LSJC7_1.0_genomic.fna │  ...

Missing pipeline parameters

2

Not sure if this a me issue or tower issue. When launching a pipeline of mine (https://github.com/socialgene/sgnf) a large number of parameters are missing, even when expanding "hidden". `nf-core schema...