Katherine Chao
Katherine Chao
We discussed at the monthly browser meeting, and the takeaway was that we want to add warning text to both the three gene pages and also to each variant falling...
Proposed links for these files: >Add new sections/links for new joint exomes/genomes frequency data (Hail Table) new all sites allele number (AN) Hail Table and TSVs - https://gnomad.broadinstitute.org/downloads#v4-all-sites-allele-number - https://gnomad.broadinstitute.org/downloads#v4-joint-freq-stats...
that makes sense to me, I think the team and community would benefit from using this resource. one question: how often does this HT get updated? if we regularly replace...
thanks for the context! copying sounds good to me
need to check whether this is still relevant
closing since it has been a year -- we can open a new ticket if needed
we could add this to our gnomad email canned response (lumping this question in with an explanation of Hail Tables being directories and not single files)
we now create pypi releases after each gnomAD version release -- can open a new ticket if this becomes an issue again
closing this -- we are hoping to update how we run validity checks in the future, and we're also trying to buffer time for internal QA prior to releases to...
sex inference on dense data exists in TGG methods https://github.com/broadinstitute/tgg_methods/blob/master/tgg/seqr_scripts/sex_check.py