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Update downloads page to include new v4.1 files

Open ch-kr opened this issue 11 months ago • 1 comments

Update v4 downloads to reflect updated files for the v4.1 release:

  • Short variants: updated Hail Tables and VCFs for exomes, genomes, new joint table
    • Add new sections/links for new joint exomes/genomes frequency data (Hail Table) new all sites allele number (AN) Hail Table and TSVs
  • Constraint: updated constraint Hail Table, TSV, and README
  • SV: updated per-chromosome SV VCFs (see Xuefang's post)
  • CNV: updated CNV VCFs (all gnomad exomes + two subsets)
  • New and if ready for v4.1: include section for v2.1.1 liftover VCF and HT filtered to three clinically relevant genes; see paper and prod ticket for more details
  • Add link to new REVEL downloadable TSVs (contain max REVEL scores for missenses in ~2k genes that were previously missing scores) (related to https://github.com/broadinstitute/gnomad-browser/issues/1447). There will be three total files: two TSVs (one for exomes, one for genomes) and a README file

Sheet where we will be tracking files to sync

ch-kr avatar Mar 15 '24 14:03 ch-kr

Proposed links for these files:

Add new sections/links for new joint exomes/genomes frequency data (Hail Table) new all sites allele number (AN) Hail Table and TSVs

  • https://gnomad.broadinstitute.org/downloads#v4-all-sites-allele-number
  • https://gnomad.broadinstitute.org/downloads#v4-joint-freq-stats

(cc @mike-w-wilson @jkgoodrich in case they have suggestions for naming)

ch-kr avatar Mar 22 '24 13:03 ch-kr