Katherine Chao
Katherine Chao
oof sorry I didn't write very much in the initial post -- this is a request to add a table to the stats page to show how many samples are...
yep, I was thinking that it would be nice to share the screenshots with the internal project to get feedback and make sure people understand what what the flag is...
Note that the current version of joint frequency table from Julia (`gs://gnomad-tmp/release/4.1/ht/joint/gnomad.joint.v4.1.faf.filtered.ht`; see [thread](https://the-tgg.slack.com/archives/C018PB68VU5/p1710511485038629)) only flags when a variant was not called in the exomes edit -- Julia added a...
they aren't gone, are they? they should be under the `Expand to see details for past versions` section edit to add this is the commit where I moved them: https://github.com/broadinstitute/gnomad-browser/pull/1430/commits/21944e2ab6531e25c12523d07a54a03a8e1a1a7d
very quickly updated joint table schema, back to you!
thank you! just added minor comments
Table for demo: `gs://gnomad-tmp/release/4.1/ht/joint/gnomad.joint.v4.1.faf.filtered.ht`; also see [thread](https://the-tgg.slack.com/archives/C018PB68VU5/p1710511485038629). Could you flag variants with values less than 10e-4 in this field: `freq_comparison_stats.cochran_mantel_haenszel_test.p_value`? Also, in the flag hover-over text, could you include the...
opened PR updating flags help page: https://github.com/broadinstitute/gnomad-browser/pull/1476 (also added PR to the megaticket). PR is pending review from Julia
https://github.com/broadinstitute/gnomad-browser/pull/1476 is ready!
I like the idea of hiding reads by default given the cost associated with displaying these data. Also, as we move into the federated scheme, we also won't have read...