Chris Friedline

Missing intervals after pr.concat

16

Hi again, There appears to be an issue with `pr.concat`. See the below example. gr1 ``` +--------------+-----------+-----------+--------------+-------+ | Chromosome | Start | End | Strand | +2 | | (category)...

Range join (also overlap, intersect) fails until I recreate the PyRanges from its .df

20

I encountered this today, and I'm completely baffled by it. I have an object `test_gr` that looks like this: ``` +--------------+-----------+-----------+----------------------+-------+ | Chromosome | Start | End | Value |...

Huge memory usage using intersection with how="containment"

3

We have some large overlaps that we are doing, and I am wondering if there is a better way that is much leveraging features of PyRanges that I've missed. Here's...

I was getting errors with a VCF file that had a header that did not validate with cyvcf but did with pyvcf, due to an info line containing a `Version`....