Chris Friedline

Results 23 comments of Chris Friedline

You've probably figured this out by now, but I deal with this by creating two different `cventries`, the first contains the org, job title, dates, location and one set of...

> I will review the Python port and link to it here in a subsequent PR. Hi there. Wondering if there's been any movement on the review of the python...

I did some experimenting. My current versions of pandas is 1.1.4 and pyranges 0.0.87. Backing down pandas to 1.0.3 has this same problem above. When I take pyranges back to...

Iterating versions after 0.0.78, things are fine with pandas 1.0.3 until 0.0.82, where it breaks. ![image](https://user-images.githubusercontent.com/3664445/98402353-21f51f00-2035-11eb-8a4f-40a958b09c15.png)

Also works with 0.0.78 and latest pandas. So something happened between 0.0.81 and 0.0.82, I guess. It's hard to see b/c the repo is not tagged. Would be great to...

With pandas 1.1.4, I incremented versions of pyranges again. Same as above - starts failing at 0.0.82.

Perhaps it's related to strandedness. Try to replicate this? ``` import numpy as np np.random.seed(0) gr3, gr4, gr5 = pr.random(strand=True), pr.random(strand=False), pr.random(strand=True) pr.concat([gr3, gr4]), pr.concat([gr3, gr5]), pr.__version__, pd.__version__ ``` yields...

Might be it. Here's my data again: `pr.concat([gr1.unstrand(), gr2])` - works ``` +--------------+-----------+-----------+-------+ | Chromosome | Start | End | +2 | | (object) | (int64) | (int64) | ......

I can confirm that on my system, after installing (`poetry add git+https://github.com/biocore-ntnu/pyranges.git#fix_160`) and restarting my kernel, that the output count is as expected. However, the resulting ranges object still shows...