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Published 20 hours ago • verified publisher icon ccruizm
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Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

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Environment for scArches loading/application

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It would be useful (either here or at the Zenodo project) to include the appropriate environment for applying the scArches model to new data. Updates to pytorch, scArches, numba, umap-tool,...

chartl avatar chartl

Spatial plots

3 comment

Great paper and thanks for sharing the code! Do you also have code on how to create the spatial plots in Figure 5 and Supplementary Figure 5? I am after...

SaskiaFreytag avatar SaskiaFreytag

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verified publisher icon ccruizm

Metadata

Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

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