ccbruels

I am having the same issue! Were you able to resolve it? If you don't have a resolution, I was thinking about running minimap separately, then commenting out that part...

Thanks for the update. My issue turned out to be more hardware/environment specific. The initial issue I saw with no bam or chain file being generated was due to an...

That would be great, thanks! Best, Christine On Thu, Oct 24, 2024 at 9:16 AM Jared Simpson ***@***.***> wrote: > Sorry about this, the openssl package in rust seems like...

Update: I was able to downgrade NumPY to v1.22.4 which seems to have resolved the issue as variants are now being called. Apparently NumPY was recently updated. Could you please...

Perhaps I picked a bad example, that variant was tagged as intergenic by annovar but I did not look at it in a genome browser. Looking at another clearly intergenic...