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Error in minimap alignment

Open amootta opened this issue 3 years ago • 3 comments

Hi there, I have just downloaded SenSV and am currently trying to use it to analyze some WGS data (approx 4X coverage) of two cell lines. This data was generated using the recently released Nanopore Ultra-Long DNA Sequencing Kit. I have produced an appropriate .fastq file to input into the software, and it has managed to complete Step 0 to produce the appropriate gzipped files and index. However, I believe the next step is not working for me. In Step 1, no bam or chain files are being generated from my fastq files, depits the step completing and giving a report of the time elapsed. This has led to an error in the following steps (Step 2 and Step 2.1). I am wondering if you could please help me figure out what is going on here, as I am very keen on using the software to confirm some potentially interesting structural variants!

Thanks very much.

amootta avatar Apr 27 '21 09:04 amootta