Corey Broeckling

@jorainer - thank you for the description. I could not find any settings anywhere in BiocParallel for assigning memory, so i think you are correct. slurm may, but i am...

FYI - a single mzML file (from pWiz) with an saved file size of about 1.5 GB was read in raw_data

Thanks - I figured it was an easy fix.

raw_data

Thanks to yo both! I will update everything and let you know what happens. Current session info: R version 3.4.2 (2017-09-28) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build...

New R, Newest BioC versions of XCMS and MSnbase, same error. I will try to update next from github. R version 3.4.4 (2018-03-15) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7...

Version incompatibility is preventing me from testing this. install_github("lgatto/MSnbase") ... Error : package 'mzR' 2.10.0 was found, but >= 2.13.6 is required by 'MSnbase' install_github("sneumann/mzR") .... ERROR: dependency 'Rhdf5lib' is...

Hello all - thanks for the tips, assistance, and sympathy..... Unless I am really botching things (which is certainly possible), there is still a problem. See session info below, after...

I think that a loaded R package was preventing updates from occurring properly. I think I have it working now. Thanks again for all the guidance. R continues to humble...

@lgatto I realize this is a closed thread, but i actually think this is the best place to deposit some benchmarking data. I was again playing with speeds for onDisk...