Corey Broeckling

@sgalanie, The script above generates an XCMS object that can be used as input to ramclustR. After clustering ions (MS and MSe), you can run the do.findmain() function in ramclustR,...

Thanks! I agree that your way is much better, but I didn't want to assign tasks, and now we have an workaround in the interim.

@jorainer - THANKS! I will give this a try soon, though will be doing some traveling so it may not not be as soon as I would like. I really...

@jorainer issues in installing xcms from your branch - apparently an mzR/Rcpp incompatibility issue. This is a fresh R install. I installed xcms from BioC, with all dependencies and package...

Thanks - changing the settings worked, though i had to change back to ref = "jomaster" ``` Downloading GitHub repo sneumann/xcms@xcms Error in utils::download.file(url, path, method = method, quiet =...

This is a fantastic idea and tool. I add to Michael's interest in its development. I would like to apply this to support broadly targeted MS/MS acquisition as described here:...

Thanks Michael - I will give that a try. Corey

https://drive.google.com/open?id=1vObVkU6-QXbjEStpiTbItvDncVAvxQUz a single mzML file can be downoaded from the above. It is standard MS/MS data structure, the only difference is that the MS/MS is fully scheduled before the start...

Thank you @jotsetung! I appreciate all the time you are putting into xcms. I intend to use the spectrum retreival and combineSpectra functionality to arrive at a collective MS/MS spectrum...

@jotsetung Getting around to playing with this, and would like to get one more feature request in for this tool. I am using the featureSpectra() function to get all the...