BnpC
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cbg-ethz
Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
Bumps [pillow](https://github.com/python-pillow/Pillow) from 9.2.0 to 9.3.0. Release notes Sourced from pillow's releases. 9.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/9.3.0.html Changes Initialize libtiff buffer when saving #6699 [@radarhere] Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [@wiredfool]...
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Hi Bnpc support, I have used row ids and cell IDs in the input and then the resulting heatmap "genoCluster_posterior_mean.png" from it contains the row ids in the exactly same...
Hi BnpC support genoCluster_posterior_mean.png are only show sequential numbers on x-axis and y-axis, how can I track back to original cell ID and mutation ID? or in other words, are...
Hi BnpC support from your published paper, your tools are best to deal with missing data (more than 20% missing). Now. we have targeted sequencing snDNA samples from FFPE, with...
Hello BnpC team, Thank you so much for the wonderful tool. I have a small question. I am wondering how i could determine the mutations that are solely responsible for...
according to the readme, BnpC can generate a output tree file (did I misunderstand?) but when I run this: run_BnpC.py snp.input.txt -tr test.gv I got error like below, it seems...
Hi Nico, Thank you so much for your reply and help with the interpretation. I just realized that the row orders shown in the cluster_posterior_mean image do not represent the...
Hello BnpC team, Thanks again for a very nice tool. I have a small question regarding the interpretation of the heatmap (genoCluster_posterior_mean.png) generated by Bnpc tool. Since there was no...
Greetings, I found BnpC is while testing out infSCITE and think it might help us with deciphering our SCS data. I have an initial question - according to the docs...
Hi there is a publication that has their generated cluster by BnpC, and each cluster associates with a function, now how can I map my data to such an existing...