Harry Caufield
Harry Caufield
There's a good list here: https://github.com/dterg/biomedical_corpora/wiki/Biomedical-Corpora-Sources Would be nice to identify some corpora in there and add here if they're missing. Minimum requirement: publicly accessible.
It would be very convenient to be able to include all components **and** imports into a full release during the make process, as seen with Phenio. Could be relevant for...
Another hardware-related oddity, courtesy of our aging build server. When I import grape, it raises `NameError: name 'HASWELL_FLAGS' is not defined` - this is on our build server, where we...
Could support for saving classifier models please be added? This came up while meeting with @LucaCappelletti94 recently but it's become relevant again in the course of updating `neat-ml` to use...
While updating NEAT to use the most recent grape release, @justaddcoffee and @hrshdhgd and I took a look at what we're using to generate node embeddings based on pretrained word...
**Describe the bug** While working through transforms for [kg-obo](https://github.com/Knowledge-Graph-Hub/kg-obo), I noticed that most of the errors I get during owl to JSON transformation are: ``` TypeError: Object of type datetime...
The prefix_prioritization_map defines prefixes to be used to replace others in a clique merge: https://github.com/biolink/kgx/blob/6645182e121c2e1172db862bba67cb114c963bed/kgx/utils/kgx_utils.py#L412-L432 But what if we have an exact preference for a prefix, e.g., we want all...
### Describe the bug During the most recent Jenkins build (and going back a while - this has been happening since at least March 2022), the downloader encountered a 404...
It would be good for other projects to have a better idea of KGX memory and other resource needs during a build. Track these, particularly for memory peaks, during the...
Some performance issues in merging KG-COVID-19 under `kgx` 1.5.5 appear to be alleviated by using 1.5.6 instead. Should upgrade when possible.