Harry Caufield
Harry Caufield
Some (or all?) dependencies aren't getting installed by pip. Example: The `cpuinfo` module may not get installed by pip, but it's imported in [the `__init__.py`](https://github.com/AnacletoLAB/ensmallen/blob/master/bindings/python/ensmallen/__init__.py). On a fresh pip install...
See Martínez-deMiguel C, Segura-Bedmar I, Chacón-Solano E, Guerrero-Aspizua S (2022) The RareDis corpus: a corpus annotated with rare diseases, their signs and symptoms. J Biomed Inf 125:103961 https://doi.org/10.1016/j.jbi.2021.103961
Two datasets for document-level biomedical RE: - DocRED - [paper](https://aclanthology.org/P19-1074/) - [data](https://github.com/thunlp/DocRED/tree/master/data) - RENET - [paper](https://link.springer.com/chapter/10.1007/978-3-030-17083-7_17) - [data](https://bitbucket.org/alexwuhkucs/gda-extraction/src/master/testing_data/)
See https://arxiv.org/pdf/2212.13138.pdf
See https://catalog.ngc.nvidia.com/models?filters=&orderBy=scoreDESC&query=GatorTron
BioIE has seen some big advances in the last few years. These should be reflected in the Research Overviews.
Related to #482
> Or perhaps \[providing better support for more modern data representations than delimited files\] is just about [Parquet ](https://parquet.apache.org/docs/file-format/) support. _Originally posted by @caufieldjh in https://github.com/biolink/kgx/issues/482#issuecomment-2030297208_
In KG construction call today (Apr 1 2024), discussion touched on [DuckDB](https://duckdb.org/) and its relevance to KG exchange. At minimum, supporting this infrastructure could make it easier to query and...