catherineel

Export p-values with heircachy amd taxanomic names?

2

Hi there! I was wondering, is there a way to export the stats generated from the heat trees? Based on your tutorial we can get the p-values for the heat...

How to filter non-significant odd named taxa, and only keep the significant odd named taxa?

8

Hi there! I've been using metacoder::filter_taxa(grepl(taxon_names, pattern = "^[a-zA-Z]+$"), reassign_obs = FALSE) %>% to remove odd taxa, but some of the odd named taxa are significant and I would like...

Metabolic pathway packages/script recommendations

4

Would you happen to have any recommendations for workshops/packages for analysing changes in metabolic pathways to complement your graphs? Your workshops are so detailed and easy to follow, so wasn't...