Catalina Vallejos

true, let's leave it as it is for now

Hi @binyaminZ, just a couple of things to add to Alan's response: 1. The trend that is typically observed between mean and over-dispersion also holds in other technologies. In particular,...

Hi @binyaminZ. You mention that you have *20-30K cells per sample*. Is there a strong sub-structure in the data (i.e. do you have very distinct sub-types within those cells). BASiCS...

Fix line 122 in `AllClasses.R`. Replace ``` object@parameters[names(object@parameters) != "epsilon"], ``` by ``` object@parameters[!(names(object@parameters) %in% c("epsilon", "delta"))], ```

thanks. let me know when the PRs are ready to be merged On 6 Oct 2020, at 10:02, Alanocallaghan wrote: Yeah I came across this already, I believe it's fixed...

possibly ok to just ignore (it only happened in my laptop). After adding the seeds to the unit tests, I have not seen the issue again.

no idea. My laptop can have some mysteries ...

as discussed today, we may apply a more liberal filter (e.g. ESS > 50)

Oh , I am sorry you had this error. Could you please let me know which version were you running before? (When you had no errors)

Sorry -- it has been a very busy start of the year, just catching up with some things. I am unable to replicate the error. Is your data publicly available?...