carsen-stringer

I have switched to using cellpose for redcell detection (if it's installed). by default it doesn't use a bleedthrough correction, would you like that as an option?

which part of the code is not running on multiple cores? I have not seen this problem before. and can you please clarify if in the same environment you have...

hmm is this `python=3.8` environment? in your old environment you can print out all the versions of software and see how they match to your new versions, specifically numpy

yes you need to make a db.npy file to run from the command line directly. if you implement this directly for single folders I'm happy to accept a pull request

are you using the latest version of suite2p? we've had success with dendrites if the recording is sufficiently long -- suite2p looks for ROIs that are correlated in time so...

Glad you like it :) It seems like you're using this option correctly so not sure what the bug is. I've added a print statement for the bad frames file...

were you able to sort this out? do you think it has to do with different planes having different number of frames per block?

thanks so much for the pull request! we are happy to modify merging depending on user needs, we do not use the merging ourselves. based on your experience, you think...

hey maria looks great! here's my integrated version. unfortunately I got this error when I clicked on a cluster: Traceback (most recent call last): File "/media/carsen/DATA2/Github/suite2p/suite2p/plugins/EnsemblePursuit.py", line 617, in self.data_selector.currentTextChanged.connect(lambda:...

FYI rotating it on screen does not currently impact ROI extraction (the unrotated ROI is grabbed by suite2p). @amorsi1 is currently working on this