Carlin MacKenzie

To be clear the idea would be to: 1. Filter the dataset to those papers which are in Wikidata 2. Find Wikidata IDs for the software which is mentioned 3....

Step 1 done https://github.com/carlinmack/qid-id/blob/main/qid-doi-pmc-pm.csv It's a 1.4 milllion line long csv collating the IDs under each QID. Note this is a replica of the three identifiers we have in Wikidata...

For step 2 we have 97k different pieces of software after disambiguation. Going to be interesting trying to find QIDs for them

Thanks for the pointer:) They have three indices they use: Bioconductor, CRAN and Pypi. There are 17,540 packages linked to these indices. Of these, there are [1,481 of these in...

I was thinking to exhaustively go through the list and generate a list of triples ``` paperQID,P4510,softwareQID ``` and then we can figure out how to import the list of...

Isn't "stated in" implied by adding it to the paper entry? Object named as is smart :)

Ah good call! At our most conservative we have [71.1k triples](https://github.com/carlinmack/qid-id/blob/main/triples.csv) :) I've only included the curated, top 1k software packages in this generation. I think I want to figure...

I've generated them in [quickstatements v1 format](https://github.com/carlinmack/qid-id/blob/main/qsv1.csv). First ten rows: ``` Q112289793|P4510|Q326489|P1932|"ggplot2"|S248|Q114078827 Q64974740|P4510|Q113334665|P1932|"DART"|S248|Q114078827 Q64084169|P4510|Q104854189|P1932|"dplyr"|S248|Q114078827 Q64084169|P4510|Q326489|P1932|"ggplot2"|S248|Q114078827 Q112717301|P4510|Q113018293|P1932|"DESeq"|S248|Q114078827 Q112610188|P4510|Q112236343|P1932|"limma"|S248|Q114078827 Q112298293|P4510|Q326489|P1932|"R package ggplot2"|S248|Q114078827 Q112298293|P4510|Q22442795|P1932|"scikit-image"|S248|Q114078827 Q112298293|P4510|Q1026367|P1932|"scikit-learn"|S248|Q114078827 Q112289158|P4510|Q113047099|P1932|"MSstats"|S248|Q114078827 ``` I also generated for the [software...

Nope I haven't pulled this data yet, I can do! What does Wikidata do if you try to add an already existing statement?

Nice! Very satisfying to see the change in https://w.wiki/5m4B