Results 20 issues of cariaso

the lack of a init_app() seems to make this hard to use with the flask appfactory pattern https://flask.palletsprojects.com/en/1.1.x/patterns/appfactories/

enhancement

https://github.com/magic-wormhole/magic-wormhole uses txtorcon. if I run `wormhole receive 3-some-code --tor --launch-tor` it will call into txtorcon. However in my current environment 100% of the time it will quickly crash with...

bug
help-wanted

### Describe the bug s3_client.copy() stores metadata for files large enough to trigger multipart handling, but smaller files trigger a different code path, and the metadata is lost. ### Expected...

bug
needs-review
s3

https://github.com/KarchinLab/open-cravat/issues/64 is a specific real world case of a variant within a TG repeat, where the lack of standard positioning across all tools and databases seems to cause a problem....

More of a performance question than a bug report, but I don't see a more suitable location. I get that groq has capabilities that JMESPath does not, but as they...

I'd love to use this, but after setting it up, wysiwyg editor is just not quite there yet. After publishing I can see the bullets, but while editing they never...

ERROR The request could not be satisfied. The Lambda function returned an invalid request or response to CloudFront. Generated by cloudfront (CloudFront) Request ID: u8GpL623hHWdlctPFH-zoYG8X8jwgNyppXnNsZJN4iRGi6orH4LsHw==

My usage of bioblend is perhaps a bit weird, so this may be due to my own extras, but I just got a stack trace and a crash which looks...

bug

https://genebass.org/ seems like a worthy annotation source with a permissive license https://genebass.org/terms and bulk download available from https://genebass.org/downloads example results https://genebass.org/gene/ENSG00000130203?burdenSet=pLoF&phewasOpts=1&resultLayout=full

Similar to #63 but not hg19 specific. I have a BAM on which I've used both https://github.com/luntergroup/octopus and https://github.com/Illumina/strelka They agree on what they found (deletion of TG & deletion...