OMOP2OBO

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**Task:** Currently, we are utilizing the entire ancestor hierarchy for a given concept when searching for a match. This means that when matching at the ancestor level we will include...

callahantiff

Coding: Creating Mapping Testing Pipeline

2

**GOALS:** Create a pipeline that can be used to extend pediatric clinical-concept mappings to a new data source. **Workflow Update:** @SteeleRobert has agreed to help with creating this pipeline. **Background:**...

callahantiff

**Needed Scripts:** Improve the `aggregates_mapping_results()` in the **[`data_utils.py`](https://github.com/callahantiff/OMOP2OBO/blob/master/omop2obo/utils/data_utils.py)** script **Task:** Currently, the function that aggregates and compiles the mapping results generated from running the omop2obo exact match and similarity mapping...

callahantiff

**TODO:** Draft the manuscript describing the OMOP2OBO mapping process **Journal:** [Natural Digital Medicine](https://www.nature.com/npjdigitalmed/authors-and-referees) **Target Submission Date:** 12/31/2019 **Tasks to Complete Manuscript:** - [ ] Stand up tool to facilitate mapping...

callahantiff

Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.25.11 to 1.26.17. Release notes Sourced from urllib3's releases. 1.26.17 Added the Cookie header to the list of headers to strip from requests when redirecting to a...

dependabot[bot]

Bumps [scipy](https://github.com/scipy/scipy) from 1.5.4 to 1.10.0. Release notes Sourced from scipy's releases. SciPy 1.10.0 Release Notes SciPy 1.10.0 is the culmination of 6 months of hard work. It contains many...

dependabot[bot]