OMOP2OBO
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Coding: Leverage OMOP CDM Ancestor Hierarchy Levels
Task: Currently, we are utilizing the entire ancestor hierarchy for a given concept when searching for a match. This means that when matching at the ancestor level we will include potential matches for all levels, which can be very vauge (see example below).
Concept: Leukemic infiltration of skin
Map:
AND(abnormality of the skin,
neoplasm, sarcoma,
neoplasm of the skin,
soft tissue sarcoma
leukemia)
While this map is correct, it includes very broad concepts like neoplasm
and sarcoma
. Including hierarchical level information could provide a method for further filtering the results to get the most precise match possible. Applying that logic could convert the map above to:
Map:
AND(abnormality of the skin,
leukemia)
When: Held until the next release (v2.0.0
)