Caleb Lareau comments

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                                            Caleb Lareau

Missing DIG_CTRL_per_barcode_metrics.csv.gz File

hey! thanks for the kind wishes. hope all is well with you!! I similarly can't find these files-- either I renamed them or they got eaten somewhere in the process....

rapidfuzz not present in bap Python package dependencies

thanks! is the fix as simple as adding this to the line that you noted?

bam file for bap2 input

Nope! there will be duplicate mark / removed during the execution of the basic pipeline