Cade Mirchandani
Cade Mirchandani
> [@cademirch](https://github.com/cademirch) Great! The files are a bit too big for me to share here I am afraid, the `.d4` is 2.6 Gb. > > The BED you can download...
This is a weird one. Ideally the cores of the host machine should be ignored when running remote executor. I'll see if I can fix this. In the time being,...
The issue is likely here, (maybe introduced by https://github.com/snakemake/snakemake/commit/5f28fcd32bd8fa0f539c4fc8aabf07702787132b?) https://github.com/snakemake/snakemake/blob/19a2ab76b475c5d7728624618bec75a7f1411e8b/snakemake/rules.py#L1018-L1025 Not sure what the fix is at first glance and don't quite have the time to debug this soon, but...
Seems like https://github.com/snakemake/snakemake/pull/3204 should fix this when merged.
Support this - I noticed this in #1833 but never got around to making a PR. Thanks for opening one!
I agree! This is something I'm thinking about in #3107, but haven't had any good ideas on how to best present the error to the user. I like your idea,...
Yeah, this can happen due to how Snakemake "compiles" and execs Snakefiles: https://github.com/snakemake/snakemake/blob/5f04aea469433b9a58f5b1d00bcef859a1537309/src/snakemake/workflow.py#L1596 I guess in this case your platform variable is shadowing the `platform` module. I can't say I...
I'll try to take a look at this this week.
I'm not sure what to think about the printing issue, I don't fully understand it as you've described here so perhaps an example will be helpful. You observation is in...