Ben Price

windows: crash fixed by updating beautifulsoup4

1

BOLDigger crashes on windows 10, claiming Pandas needs beautifulsoup4 v 4.11.1 or newer (my machine had 4.10 installed). Fixed by forcing an upgrade of bs4 using: pip install --upgrade beautifulsoup4

Hi! Any suggestions on how to run MITObim on a large batch of samples - e.g. 100 or more, on a HPC? The samples would not always share a reference...

minimum sequence length 54bp?

3

Hi Nathan, we are working with museum samples, so lots of very short fragments. I've noticed that exonerate only uses sequences that are 54bp or longer from our data. We...

filename formatting for auto-grouping

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Files from our sequencing facility have filenames that extend past the "F" or "R" direction flag (e.g. A1_R**_096_B23**.ab1), SeqTrace only recognised pairs of tracefiles when "_F" or "_R" was the...

It would be really helpful if there was an option to trim the first X and last Y bases as this would really help remove the junk that Sanger seq...